Session 4: data analysis in IPython NotebookΒΆ

Copy rsem-final out of the biology bootcamp shared directory into your home directory (‘Home’).

At the command line, now do

cd ~/rsem-final && ipython notebook --pylab=inline

We’ll work through a new notebook first, and then go through ‘rsem-ebseq’.

Additional IPython resources:

Note that you can use ‘%loadpy’ in IPython Notebook to grab code from online and import it into your notebook automagically.