Session 2: mRNAseq assembly and annotation

Copying common files around

Go to Activities (upper left) & click; select the file drawer.

Go to Bookmarks, Training materials. Enter the Super Secret Password (on the board at the front).

Double click on ‘NGS bootcamp biologists’.

Copy the desired files (right click, copy); then go over the Bookmarks again, select ‘Home’. Do ‘paste’.

Working with mRNAseq data

(Based https://khmer-protocols.readthedocs.org/en/latest/

Understanding Read Formats and Quality Controlling Data

mRNAseq normalization and assembly